PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117770001
Common NameGSBRNA2T00117770001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 204aa    MW: 23217.3 Da    PI: 6.215
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117770001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.81e-071183552
              G2-like 35 lmkvkgLtlehvkSHLQk 52
                         +m+vkgLt++hvkSHLQ 
  GSBRNA2T00117770001  1 MMDVKGLTISHVKSHLQN 18
                         7****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-6118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MMDVKGLTIS HVKSHLQNIH FGHSLILYYY YYFETEENSL FSIRRQDTEE DYLQDNLSLH  60
TRNDCPTGFH TFSLSSHSSL RGRRKGHTSE SRGGDDVDDS LHIMNMKTNG TTTFPSHHFH  120
QNTEKETNPW HEHEHEHKHE HEEEELSLSL SLNHHHLRSN GSSVSETSDA VSTCSAPFVN  180
KDCFGSSPKI DLDLNLSISL LGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117770001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114210.11e-105PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
TrEMBLA0A078ESA61e-147A0A078ESA6_BRANA; BnaA09g18940D protein
STRINGBra017425.1-P2e-96(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.17e-32G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]